Select a brain structure to view genes found to have a high level of expression within it, or find a gene of interest by choosing the first character in its symbol. Browse data is also available as XML.

Brain Structure:	Show >>
Gene Symbol:	A B C D E F G H I J K L M N O P Q R S T U V W X Y Z   1 2 3 4 5 6 7 8 9 0

The Allen Reference Atlas was generated by manual annotation. Click a plane of section to show its contact sheet of thumbnail images. Click a thumbnail to view its corresponding high-resolution image.

Coronal         Sagittal         Search

The Anatomic Gene Expression Atlas (AGEA) is a data-driven, interactive three-dimensional atlas of the adult mouse brain based on Allen Brain Atlas ISH gene expression images. AGEA characterizes the organization of the mouse brain as derived exclusively from gene expression data without reference to classical neuroanatomy. AGEA, which is based on approximately 4,000 coronal gene sets, allows anatomic specification and browsing based on 3-D spatial coordinates and expression threshold control.

AGEA