Develop

Software packages and interfaces for the community to access and use online projects, resources, publications and data sets in the Brain Knowledge Platform or brain-map.org.

Allen Brain Cell Atlas - Data Access

Jupyter notebooks that provide tutorials and examples for downloading and analysing data from the Allen Brain Cell (ABC) Atlas, including data from whole adult and aged mouse brain, whole human brain, cross-species basal ganglia, and human studies of Alzheimer's and Parkinson's disease.

Programmatic Data Access

Other programmatic tools

Allen Software Development Toolkit (AllenSDK)

Python toolkit focused primarily on tools and analysis associated with the Allen Cell Types Database, Mouse Connectivity Atlas, and Allen Brain Observatory.

brain-map API

Access to published data for many resources on brain-map through 2019. API, documentation, and sample applications are made available to the community under the Allen Institute's Terms of Use.

Related Resources

Support

Tutorials & How-Tos

Access tutorials and how-to resources for a wide variety of brain map atlases and datasets in this index. Search for relevant content via keywords and category filters. Learn how to use our tools to their full potential with step-by-step walkthroughs and guidance.

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Support

Documentation

Access documentation for a wide variety of brain map atlases and datasets in this index. Search for relevant content via keywords and category filters. Learn how to use our tools to their full potential to advance your research.

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