Atlases

High-resolution anatomical atlases with closely related complete and high-quality datasets that enrich the atlases. These provide a common reference framework that accelerates discovery, supports tool development, and enables comparison across studies and species.

Mouse

ABC Atlas
The Allen Brain Cell Atlas provides a platform for visualizing multimodal single cell data across the mammalian brain.
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Cell Type Knowledge Explorer
Explore aggregated and summarized multi-modal information about mouse cell types in MOp.
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Patch-Seq in Mouse Primary Visual Cortex
Visualize electrophysiological, morphological, and transcriptomic features of majority GABAergic cells in mouse visual cortex.
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Mouse Brain Atlas (ISH)
A unique multimodal atlas of the adult mouse brain, featuring anatomic and genomic data.
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Mouse Brain Connectivity Atlas
A brain-wide map of neural projections, including cell class-specific data.
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Brain Observatory
A survey of in vivo recordings from the mouse visual cortex.
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Cell Type Database
A database of biological features derived from single cells.
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Developing Mouse Brain Atlas (ISH)
A detailed atlas of gene expression across 7 stages of development.
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Mouse Spinal Cord Atlas (ISH)
A detailed atlas of gene expression across the adult and juvenile mouse spinal cord.
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Gene Expression Navigator Adult Mouse
Search adult mouse for structures based on gene expression.
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Gene Expression Navigator Developing Mouse
Search developing mouse for structures based on gene expression.
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Mouse Sleep Study
Gene expression data in the mouse brain for five conditions of sleeping and waking.
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Find more mouse data in the Brain Knowledge Platform
Use this pre-filtered view of the BKP's Data Catalog to find more mouse atlases and datasets

Human

Seattle Alzheimer's Disease Brain Cell Atlas
A multifaceted resource for exploring the cellular and molecular basis of Alzheimer's Disease from our Seattle-AD consortium
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ABC Atlas
Explore single cell and spatial -omics, neuropathology, and donor demographics using free, interactive tools.
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Cell Type Knowledge Explorer
Explore aggregated and summarized multi-modal information about human cell types in MOp.
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Patch-Seq Datasets
Explore all our patch-seq dataset for mammalian neurons.
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Cell Types Database
A database of biological features derived from single cells.
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Human Brain Atlas
A unique multimodal atlas of the adult human brain, featuring anatomic and genomic data.
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Developing Human Brain Atlas
The BrainSpan project is a detailed atlas of gene expression across human development.
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Aging, Dementia and TBI
A dataset for exploring the neuropathology and genomic features of disease and aging.
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Ivy Glioblastoma Atlas Project
IvyGAP is a dataset for exploring the anatomic and genomic basis of glioblastoma.
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Autism dataset
A dataset for exploring expression of 25 genes in neocortex of individuals with and without autism.
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Schizophrenia dataset
A dataset for exploring expression of 60 genes in prefrontal cortex of individuals with and without schizophrenia.
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Neurotransmitter dataset (ISH)
High-resolution ISH data characterizing expression of selected neurotransmitter system genes in the adult human brain.
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Find more human data in the Brain Knowledge Platform
Use this pre-filtered view of the BKP's Data Catalog to find more human atlases and datasets

Non-human primate

ABC Atlas
Explore single cell and spatial -omics, neuropathology, and donor demographics using free, interactive tools.
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Cell Type Knowledge Explorer
Explore aggregated and summarized multi-modal information about non-human primate cell types in MOp.
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Adult & Developing NHP Atlas
The NIH Blueprint Non-Human Primate Atlas characterizes the developing rhesus macaque brain.
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Find more non-human primate data in the Brain Knowledge Platform
Use this pre-filtered view of the BKP's Data Catalog to find more non-human primate atlases and datasets

Get the most out of our atlases

Learn how to unlock the full potential of these atlases with tutorials, how-tos, and technical documentation. Get inspired by the tools other neuroscientists have built using this data.

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