Analyze
Analyze your own data for cell type mapping and other analysis workflows.
MapMyCells
MapMyCells allows users to assign cell type names from Allen Institute-hosted taxonomies to their own single cell and spatial transcriptomics data. It transforms cell types from a concept in publications to a tool for public research.
Other analysis resources
Related Resources
See the many computational or educational tools which external institutions, universities, and individuals have created utilize Allen Brain Map data.
Access tutorials and how-to resources for a wide variety of brain map atlases and datasets in this index. Search for relevant content via keywords and category filters. Learn how to use our tools to their full potential with step-by-step walkthroughs and guidance.
Access documentation for a wide variety of brain map atlases and datasets in this index. Search for relevant content via keywords and category filters. Learn how to use our tools to their full potential to advance your research.