ABAT (Allen Brain Atlas Tools) stores mutiple MATLAB functions to read, analyze, and visualize various kinds of data from the Allen Brain Atlas.

Link to the tool

More information

  • RRID:SCR_023855
  • Software Type:data analysis
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Human Brain Atlas
  • Author(s):Zonglei Zhen
  • Year Released:2017

Explore More Resources

Brain Street View
Brain Street View

Load and plot Allen Connectivity Data in MATLAB

ElecFeX (Electrophysiological Feature eXtraction)
ElecFeX (Electrophysiological Feature eXtraction)

ElecFeX is a MATLAB-based toolbox for extracting electrical features from current-clamp recordings. It has a graphical user interface enabling an effortless batch analysis for electrophysiologists. Supported data formats include ABF, IBW, DAT, and NWB.

Allen Density Vectors
Allen Density Vectors

AllenDensityVectors contains the commands to establish direction vectors (3d unit vectors associated to voxels of a brain region) for the cerebellum, the isocortex, and the thalamus of the AIBS P56 mouse brain.