The Allen CCF tool provides MATLAB code to work with the Allen Mouse Brain CCF data, specifically the 10µm voxel 2017 version.

Link to the tool

More information

  • RRID:SCR_023830
  • Software Type:data analysis software
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Common Coordinate Framework
  • Author(s):Philip Shamash, Andy Peters, etc
  • Year Released:2022

Explore More Resources

Brain Street View
Brain Street View

Load and plot Allen Connectivity Data in MATLAB

ElecFeX (Electrophysiological Feature eXtraction)
ElecFeX (Electrophysiological Feature eXtraction)

ElecFeX is a MATLAB-based toolbox for extracting electrical features from current-clamp recordings. It has a graphical user interface enabling an effortless batch analysis for electrophysiologists. Supported data formats include ABF, IBW, DAT, and NWB.

Allen Density Vectors
Allen Density Vectors

AllenDensityVectors contains the commands to establish direction vectors (3d unit vectors associated to voxels of a brain region) for the cerebellum, the isocortex, and the thalamus of the AIBS P56 mouse brain.