ARA Tools is a collection of MATLAB functions to analyze mouse whole-brain imaging data and the associated "sparse" point data such as cell locations, traced neurite trees, or traced projections from a bulk injection. This package relates sparse data to the Allen Mouse Brain Reference Atlas.

Link to the tool

More information

  • RRID:SCR_023826
  • Software Type:data analysis software
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Mouse Brain Reference Atlas
  • Author(s):Rob Campbell, Antonin Blot, Steven J. West, Adam Tyson
  • Year Released:2022

Explore More Resources

Brain Street View
Brain Street View

Load and plot Allen Connectivity Data in MATLAB

ElecFeX (Electrophysiological Feature eXtraction)
ElecFeX (Electrophysiological Feature eXtraction)

ElecFeX is a MATLAB-based toolbox for extracting electrical features from current-clamp recordings. It has a graphical user interface enabling an effortless batch analysis for electrophysiologists. Supported data formats include ABF, IBW, DAT, and NWB.

Allen Density Vectors
Allen Density Vectors

AllenDensityVectors contains the commands to establish direction vectors (3d unit vectors associated to voxels of a brain region) for the cerebellum, the isocortex, and the thalamus of the AIBS P56 mouse brain.