Skip to main content
Brain Knowledge Platform
Atlases
Our Research
Support
Search
Search
Brain Knowledge Platform
Atlases
Our Research
Support
Brain-map>Support>Community Tools>Atlas Ontology Model (AtOM)>Atlas Ontology Model (AtOM)
Educational

Atlas Ontology Model (AtOM)

The Atlas Ontology Model (AtOM) identifies and defines the relationships between four common atlases and characterizes their properties and organization. This model can serve as a suggestion for minimum requiremens for atlases and will accelerate neuroscience data integration.

Link to the tool | Relevant publication

More information

  • RRID:SCR_023813
  • Software Type:educational, data integration tool
  • Modality:ontology
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas, Allen Common Coordinate Framework
  • Author(s):Heidi Kleven, Thomas H. Gillespie, Lyuba Zehl, Time Dickscheid, Jan G. Bjaalie, et al.
  • Year Released:2011

Explore More Resources

Learning How to Code While Analyzing an Open Access Electrophysiology Dataset
Learning How to Code While Analyzing an Open Access Electrophysiology Dataset

This resource is a lesson plan for users to begin coding in Python and interact with and analyze electrophysiology data from the Allen Institute for Brain Science.

QUINT
QUINT

The QUINT workflow includes a suite of various software to form an analysis pipeline of atlas-based quantification of labeled features in histological images from a mouse or rat brain.

A Course-based Research Experience Using Allen Brain Map
A Course-based Research Experience Using Allen Brain Map

This resource mimics a course for users to utilize Allen Brain Map resources to develop a research question, document their methodology and results, and eventually present their work in a conference environment.