Data Repositories
Blue Brain Cell Atlas
The Blue Brain Cell Atlas describes number, types, and positions of cells in all areas of mouse brain. It provides densities and positions of all excitatory, inhibitory and neuromodulatory neurons, as well as astrocytes, oligodendrocytes and microglia in each of brain regions defined in Allen Mouse Brain Atlas. Users can download cell numbers for statistical analysis, cell positions and types for modeling and visualizing brain areas. The foundational workflow uses imaging data from Allen Institute Common Coordinate Framework to generate cell positions and assign their type using API for data access.
More information
- RRID:SCR_019266
- Software Type:data repository
- Modality:morphology, electrophysiology, gene expression
- Allen Resource(s) Utilized:Allen Mouse Brain Atlas, Allen Institute Common Coordinate Framework
- Author(s):Csaba Erö
- Year Released:2018