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Brain-map>Support>Community Tools>Brainmapr>Brainmapr
Data Analysis

Brainmapr

Brainmapr is an R package to infer spatial location of neural progenitor subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Brain Atlas.

Link to the tool | Relevant publication

More information

  • RRID:SCR_023816
  • Software Type:data analysis software, data integration
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Developing Mouse Brain Atlas
  • Author(s):Jean Fan- Kharchenko Lab at Biomedical Informatics (HMS)
  • Year Released:2015

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