CutNII provides visualization and slicing of 3D isotropic image data as well as various atlases. Through orthogonal views of the three standard planes (coronal, sagittal, horizontal) and a custom-angle slice cut through the volume, CutNII produces custom-angle atlas slices that match histological sections with non-standard cutting angles. Custom slicing then allows for the inspection of anatomical features from non-conventional angles.

Link to the tool

More information

  • RRID:SCR_023824
  • Software Type:visualization software
  • Modality:histology
  • Allen Resource(s) Utilized:Allen Mouse Brain Reference Atlas
  • Author(s):Gergely Csucs
  • Year Released:2016

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