MeshGen generates separate mesh files for each label present in the segmentation volume, simplifying the creations of procedural meshes.

Link to the tool

More information

  • RRID:SCR_023819
  • Software Type:data analysis software
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Common Coordinate Framework, Mouse Brain Atlas
  • Author(s):John Tsiombikas, Gergely Csucs
  • Year Released:2016

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