The mouse-abi-tool is a data anaysis tool used to pull gene expression data from the Allen Institute API in Common Coordinate Framework v2 space.

Link to the tool

More information

  • RRID:SCR_023831
  • Software Type:data analysis software
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas, Common Coordinate Framework
  • Author(s):Eli Cornblath
  • Year Released:2020

Explore More Resources

Brain Street View
Brain Street View

Load and plot Allen Connectivity Data in MATLAB

ElecFeX (Electrophysiological Feature eXtraction)
ElecFeX (Electrophysiological Feature eXtraction)

ElecFeX is a MATLAB-based toolbox for extracting electrical features from current-clamp recordings. It has a graphical user interface enabling an effortless batch analysis for electrophysiologists. Supported data formats include ABF, IBW, DAT, and NWB.

Allen Density Vectors
Allen Density Vectors

AllenDensityVectors contains the commands to establish direction vectors (3d unit vectors associated to voxels of a brain region) for the cerebellum, the isocortex, and the thalamus of the AIBS P56 mouse brain.