This software generates datasets of whole mouse brains imaged at submicron resolution that allows reconstructions of complete axonal arbors of individual neurons across the entire mouse brain.

Link to the tool

More information

  • RRID:SCR_016668
  • Software Type:visualization tool
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Mouse Brain Reference Atlas, Allen Mouse Brain Common Coordinate Framework
  • Author(s):Jayaram Chandrashekar, Michael Economo
  • Year Released:2017

Explore More Resources

Neuron SWC editor
Neuron SWC editor

The free online editor lets users visualize, edit, import, and export neuron SWC files in 2D/3D and save transparent PNGs. The files can be used in simulation software like Neuron.

NeuronBench
NeuronBench

NeuronBench is a web platform allowing users to interact with biologically realistic model neurons in the browser, and allows educators and researchers to develop these models with fast visual feedback.

5-HT2A MERFISH
5-HT2A MERFISH

Custom visualizer for MERFISH dataset provided by [Yao et al., 2023] By Roberto De Filippo