Skip to main content
Brain Knowledge Platform
Atlases
Our Research
Support
Search
Search
Brain Knowledge Platform
Atlases
Our Research
Support
Brain-map>Support>Community Tools>NeuroInfo>NeuroInfo
Visualization

NeuroInfo

NeuroInfo performs automated brain-wide characterization of cell populations and biochemical marker expression, and generates quantitative analysis reports on these objects within individual brain regions. Brain volumes are registered to either the Allen Mouse Brain Atlas or the Waxholm Rat Atlas so that experimental measurements can be accumulated or compared in a standardized coordinate system across animals, cohorts, and laboratories.

Link to the tool

More information

  • RRID:SCR_017346
  • Software Type:visualization tool
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas

Explore More Resources

Neuron SWC editor
Neuron SWC editor

The free online editor lets users visualize, edit, import, and export neuron SWC files in 2D/3D and save transparent PNGs. The files can be used in simulation software like Neuron.

NeuronBench
NeuronBench

NeuronBench is a web platform allowing users to interact with biologically realistic model neurons in the browser, and allows educators and researchers to develop these models with fast visual feedback.

5-HT2A MERFISH
5-HT2A MERFISH

Custom visualizer for MERFISH dataset provided by [Yao et al., 2023] By Roberto De Filippo