Skip to main content
Brain Knowledge Platform
Atlases
Our Research
Support
Search
Search
Brain Knowledge Platform
Atlases
Our Research
Support
Brain-map>Support>Community Tools>Neuropixels Trajectory Explorer>Neuropixels Trajectory Explorer
Visualization

Neuropixels Trajectory Explorer

The Neuropixels trajectory explorer allows a user to use one or more virtual Neuropixels probes to plan trajectories to target brain regions. This software can be run from MATLAB, but a standalone software version is also included in the github package.

Link to the tool

More information

  • Software Type:visualization tool, data analysis software
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Mouse Common Coordinate Framework
  • Author(s):Andy Peters
  • Year Released:2022

Explore More Resources

Neuron SWC editor
Neuron SWC editor

The free online editor lets users visualize, edit, import, and export neuron SWC files in 2D/3D and save transparent PNGs. The files can be used in simulation software like Neuron.

NeuronBench
NeuronBench

NeuronBench is a web platform allowing users to interact with biologically realistic model neurons in the browser, and allows educators and researchers to develop these models with fast visual feedback.

5-HT2A MERFISH
5-HT2A MERFISH

Custom visualizer for MERFISH dataset provided by [Yao et al., 2023] By Roberto De Filippo