Processing, Registration, Integration

Nutil

Nutil is a data processing resource which simplifies and streamlines the pre-and-post processing of 2D brain image data from both the mouse and rat. To use Nutil, the user specifies the input and output parameters in the GUI, requiring no prior software experience.

Link to the tool

More information

  • RRID:SCR_017183
  • Software Type:data processing software
  • Modality:spatial analysis, histology
  • Allen Resource(s) Utilized:Allen Mouse Brain reference atlas
  • Author(s):Sharon Yates, Nicolaas Groeneboom
  • Year Released:2019

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MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis
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Atlas Densities
Atlas Densities

AtlasDenities contains the tools to create the BBP Cell Atlas, using the Allen Mouse Brain Atlas and collected literature density values. It provides a list of volumetric files that provides cell type density estimates for each voxel.