Skip to main content
Brain Knowledge Platform
Atlases
Our Research
Support
Search
Search
Brain Knowledge Platform
Atlases
Our Research
Support
Brain-map>Support>Community Tools>Single Cell Portal>Single Cell Portal
Data Repositories

Single Cell Portal

The Single Cell Portal (SCP) is both a data hub and a cell visualization tool. The user can search by study or gene and visualize the data through plots showing cell clusters, gene expression within and across studies, three dimensional trajectories, and chromosomal rearrangements.

Link to the tool

More information

  • RRID:SCR_014816
  • Software Type:data repository, visualization tool, data analysis
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Cell Types Database
  • Author(s):Jon Bistline, Eric Weitz, Jean Chang, Vicky Horst, Timothy Tickle

Explore More Resources

Recombinase (cre) Activity
Recombinase (cre) Activity

Recombinase (cre) Activity is a curated data platform with all recombinase-containing transgenes and knock-ins developed in mice, creating a comprehensive resource delineating known activity patterns and for searching relevant mouse resources.

NIAGADS
NIAGADS

NIAGADS is a data repository of genotypic data related to Alzheimer's disease and related dementias (ADRD) and aging.

BIL (Brain Image Library)
BIL (Brain Image Library)

The Brain Image Library (BIL) is a searchable public data repository for large brain image datasets. Each sample is labeled with modality, technique, related organization, organism, method, and strucure.