The USCS Cell Browser is a 2-dimensional cell viewer which displays cells as a dimensionality reduction plot with gene expression (single cell RNA sequencing) data overlaid.

Link to the tool | Relevant publication

More information

  • RRID:SCR_023293
  • Software Type:visualization tool, data analysis
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Cell Types Database
  • Author(s):Max Haeussler, Matthew L Speir, Aparna Bhaduri, Nikolay S Markov, Pablo Moreno, et al.
  • Year Released:2021

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