Supplemental Data

The download page allows you access to supplementary data associated with the BrainSpan Atlas of the Developing Human Brain.

‍

Developmental Transcriptome Dataset

Downloadable archive files containing normalized expression values and meta-data (as displayed in heatmap) for analysis:

RNA-Seq Gencode v10 summarized to exons
RNA-Seq Gencode v10 summarized to genes
Exon microarray summarized to probe sets
Exon microarray summarized to genes

Archived data files containing normalized RPKM expression values employing a historical normalization method (available prior to October 2013):

RNA-Seq Gencode v3c summarized to exons
RNA-Seq Gencode v3c summarized to genes

For detailed descriptions of current and historical normalization processes, see the technical white paper, ‍

‍

Prenatal LMD Microarray Dataset

Downloadable archive files containing normalized expression values for each brain and meta-data for analysis:

H376.IIIA.02, male, 15 pcw
H376.IIIB.02. female, 16 pcw
H376.IV.02, female, 21 pcw
H376.IV.03, female, 21pcw

Download XML or CSV containing tissue sample meta-information and URL to download each of the raw LMD microarray files.

‍

3-D Fiber Tract and Developmental Transcriptome Sampling Annotation

3-D expert annotation of 22 major fiber tracts across 8 developmental stages accompanied by annotation of the Developmental Transcriptome survey sampling sites.

14 pcw annotation: fiber tracts , structures
17 pcw annotation: fiber tracts , structures
19 pcw annotation: fiber tracts , structures
37 pcw annotation: fiber tracts , structures
3 yrs annotation: fiber tracts
8 yrs annotation: fiber tracts
15 yrs annotation: fiber tracts
32 yrs annotation: fiber tracts

‍

Supplemental Data

MRI/DTI data for prenatal specimens
Methylation
MicroRNA
MRF bigWig Gencode v10
MRF Gencode v3c‍