The Developing Mouse - Visual Cortex taxonomy is derived from a single cell transcriptomic dataset containing568,654 cells from donors ranging in age from embryonic to adult. The cell-type assignment is a four-level taxonomy defining 15 classes, 40 subclasses, 148clusters and 714 subclusters. This cell-type assignment is broadly consistent with those from the previous studies from the Allen Institute for Brain Science, Whole Mouse Brain (WMB) and the Broad Institute whole mouse brain taxonomy at the subclass level while providing finer cell-type and temporal resolutions with additional subcluster annotations.
Taxonomy Name: 20260131_Developing_Mouse_VIS_10X
Taxonomy Description: Developing Mouse - Visual Cortex
Species: Mouse
Download and explore the data via Python notebook
A high-resolution transcriptomic atlas of cell types in the aging mouse brain
An integrated taxonomy of the whole mouse brain built upon two publicly released transcriptionally defined WMB taxonomies from Allen Institute for Brain Science and Broad Institute.
A taxonomy of the mouse visual and anterior lateral motor cortex
