This manuscript used two complementary single-cell RNA-sequencing approaches, SMART-seq and 10x, to profile ∼1.2 million cells covering all regions in the adult mouse isocortex and hippocampal formation and derived a hierarchical cell type taxonomy comprising 379 transcriptomic types.
Taxonomy Name: 20210616_Adult_Mouse_Cortex-Hippocampus_SMARTseq
Taxonomy Description: Mouse Isocortex & Hippocampal Formation Taxonomy
Species: Mouse
Version: 1.0.0
CCN Number: CCN202106160
AIT Number: 5.1_CTX_HPF
Download the AIT files - 10X data & SMART-seq data
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Explore the data using the Transcriptomics Explorer - 10X data & SMART-seq data
Explore the data using the cluster summary shiny app
View the clustering & analysis code on GitHub
A high-resolution transcriptomic atlas of cell types in the aging mouse brain
A taxonomy of the mouse visual cortex cell types spanning development.
An integrated taxonomy of the whole mouse brain built upon two publicly released transcriptionally defined WMB taxonomies from Allen Institute for Brain Science and Broad Institute.
