This manuscript used two complementary single-cell RNA-sequencing approaches, SMART-seq and 10x, to profile ∼1.2 million cells covering all regions in the adult mouse isocortex and hippocampal formation and derived a hierarchical cell type taxonomy comprising 379 transcriptomic types.
Taxonomy Name: 20210616_Adult_Mouse_Cortex-Hippocampus_SMARTseq
Taxonomy Description: Mouse Isocortex & Hippocampal Formation Taxonomy
Species: Mouse
Version: 1.0.0
CCN Number: CCN202106160
AIT Number: 5.1_CTX_HPF
Download the AIT files - 10X data & SMART-seq data
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Explore the data using the Transcriptomics Explorer - 10X data & SMART-seq data
Explore the data using the cluster summary shiny app
View the clustering & analysis code on GitHub
An integrated taxonomy of the whole mouse brain built upon two publicly released transcriptionally defined WMB taxonomies from Allen Institute for Brain Science and Broad Institute.
A taxonomy of the mouse visual and anterior lateral motor cortex
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
