Using advanced technologies that profile individual cells, we unveiled an atlas cataloging the location and type of every cell in the adult mouse brain. From >8 million cells in multiple data modalities, the team identified over 5,300 cell types – far more than known before – and pinpointed their locations within the brain’s intricate geography. This study is part of a set of 10 papers in Nature that will likely define the mouse whole brain for years to come.
Taxonomy Name: 20230722_BICCN-Adult_Mouse_WholeBrain_10X
Taxonomy Description: Whole Mouse Brain Taxonomy
Species: Mouse
CCN Number: CCN20230722
AIT Number: 21
Download and explore the data via Python notebook
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Explore the data in the ABC Atlas
Map your data using the whole mouse brain taxonomy as a reference
An integrated taxonomy of the whole mouse brain built upon two publicly released transcriptionally defined WMB taxonomies from Allen Institute for Brain Science and Broad Institute.
A taxonomy of the mouse visual and anterior lateral motor cortex
A hierarchical cell type taxonomy comprising 379 transcriptomic types found in the mouse isocortex and hippocampal formation
