Using advanced technologies that profile individual cells, we unveiled an atlas cataloging the location and type of every cell in the adult mouse brain. From >8 million cells in multiple data modalities, the team identified over 5,300 cell types – far more than known before – and pinpointed their locations within the brain’s intricate geography. This study is part of a set of 10 papers in Nature that will likely define the mouse whole brain for years to come.
Taxonomy Name: 20230722_BICCN-Adult_Mouse_WholeBrain_10X
Taxonomy Description: Whole Mouse Brain Taxonomy
Species: Mouse
CCN Number: CCN20230722
AIT Number: 21
Download and explore the data via Python notebook
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Explore the data in the ABC Atlas
Map your data using the whole mouse brain taxonomy as a reference
A high-resolution transcriptomic atlas of cell types in the aging mouse brain
A taxonomy of the mouse visual cortex cell types spanning development.
An integrated taxonomy of the whole mouse brain built upon two publicly released transcriptionally defined WMB taxonomies from Allen Institute for Brain Science and Broad Institute.
