Skip to main content
Brain Knowledge Platform
Atlases
Our Research
Support
Search
Search
Brain Knowledge Platform
Atlases
Our Research
Support
Brain-map>Support>Community Tools>ABI-expression-data-generator>ABI-expression-data-generator
Processing, Registration, Integration

ABI-expression-data-generator

ABI-expression-data-generator is a package-manager-friendly archive of gene expression maps registered in SMRI standard space from the Allen Mouse Brain Atlas. It queries the database, can download available data, convert it from a raw format to NIfTI, and register it to a standard space.

Link to the tool

More information

  • RRID:SCR_023834
  • Software Type:data processing software, data registration
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas
  • Author(s):Horea Christian
  • Year Released:2020

Explore More Resources

BREIN (Brain Region Expression Intensity Neuroanalysis)
BREIN (Brain Region Expression Intensity Neuroanalysis)

BREIN can be used to analyzes RNA in-situ hybridization or immunohistochemical images. It can register images to Allen reference atlas and calculates the signal intensity per brain region, and outputs a spreadsheet of the results.

MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis
MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis

MENGA is a platform for the integration of imaging data and Allen Human Brain Atlas mRNA data. MENGA investigates correlation patterns between various imaging modalities and gene expression profiles based on the Allen Brain Atlas.

Nutil
Nutil

Nutil is a data processing resource which simplifies and streamlines the pre-and-post processing of 2D brain image data from both the mouse and rat. To use Nutil, the user specifies the input and output parameters in the GUI.