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Brain-map>Support>Community Tools>AllenDigger>AllenDigger
Processing, Registration, Integration

AllenDigger

AllenDigger is a toolkit to preprocess gene expression data and visualize the spatial distribution of genes of interest, characterize the spatial heterogeneity of the brain, as well as to register cells from single-cell transcriptomics data to fine anatomical brain regions via machine learning methods with high accuracy. AllenDigger aids precise spatial gene expression queries and extra spatial information to further interpret the scRNA-seq data.

Link to the tool | Relevant publication

More information

  • RRID:SCR_023812
  • Software Type:data preprocessing software, data registration, visualization
  • Modality:gene expression
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas
  • Author(s):Mengdi Wang, Liangchen Zhuo, Wenji Ma, Yan Zhuo, Xiaoqun Wang
  • Year Released:2022

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