Skip to main content
Brain Knowledge Platform
Atlases
Our Research
Support
Search
Search
Brain Knowledge Platform
Atlases
Our Research
Support
Brain-map>Support>Community Tools>AP_histology>AP_histology
Processing, Registration, Integration

AP_histology

AP-histology is a data pipeline which aligns histology images to the Allen CCF.

Link to the tool

More information

  • RRID:SCR_023847
  • Software Type:data registration
  • Modality:histology
  • Allen Resource(s) Utilized:Allen Common Coordinate Framework
  • Author(s):Andy Peters
  • Year Released:2023

Explore More Resources

BREIN (Brain Region Expression Intensity Neuroanalysis)
BREIN (Brain Region Expression Intensity Neuroanalysis)

BREIN can be used to analyzes RNA in-situ hybridization or immunohistochemical images. It can register images to Allen reference atlas and calculates the signal intensity per brain region, and outputs a spreadsheet of the results.

MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis
MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis

MENGA is a platform for the integration of imaging data and Allen Human Brain Atlas mRNA data. MENGA investigates correlation patterns between various imaging modalities and gene expression profiles based on the Allen Brain Atlas.

Nutil
Nutil

Nutil is a data processing resource which simplifies and streamlines the pre-and-post processing of 2D brain image data from both the mouse and rat. To use Nutil, the user specifies the input and output parameters in the GUI.