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Brain-map>Support>Community Tools>DeepSlice>DeepSlice
Processing, Registration, Integration

DeepSlice

DeepSlice is an automated data registration tool based in Python which aligns mouse histology with the Allen Mouse Common Coordinate Framework. This tool only works on coronally cute sections and is best for brightfield images.

Link to the tool | Relevant publication

More information

  • RRID:SCR_023854
  • Software Type:data registration
  • Modality:histology, imaging
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas, Common Coordinate Framework
  • Author(s):Harry Carey, Michael Pegios
  • Year Released:2023

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