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Brain-map>Support>Community Tools>MIRACL>MIRACL
Processing, Registration, Integration

MIRACL

MIRACL is an automated software resource which collates histologically cleared volumes alongside connectivity atlases and MRI, enabling analysis of histological features across multiple fiber tracts and networks, and their correlation with in vivo biomarkers. This tool serves as an open source pipeline for automated registration of mice clarity data to Allen reference atlas.

Link to the tool

More information

  • RRID:SCR_020945
  • Software Type:data registration software
  • Modality:histology, image registration
  • Allen Resource(s) Utilized:Allen Mouse Brain Reference Atlas, Allen Mouse Connectivity Atlas
  • Author(s):Magen Goubran
  • Year Released:2023

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