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Brain-map>Support>Community Tools>SMART: Semi-manual alignment to reference templates>SMART: Semi-manual alignment to reference templates
Processing, Registration, Integration

SMART: Semi-manual alignment to reference templates

SMART is an R package which builds a pipeline to process whole brain imaging datasets. This pipeline includes image registration, segmentaion, coordinate navigation, standardized organization, and novel meothods to parse through whole brain datasets and visualize data across various brain regions.

Link to the tool | Relevant publication

More information

  • RRID:SCR_019265
  • Software Type:data alignment, data segmentation, data registration, data analysis
  • Modality:neuroanatomy
  • Allen Resource(s) Utilized:Allen Mouse Brain Atlas, Allen Common Coordinate Framework
  • Author(s):Michelle Jin, Joseph Nguyen
  • Year Released:2019

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