These anatomical reference atlases illustrate the mouse spinal cord in adult and juvenile C57BL/6J mouse. They provide a spatial map for the Allen Mouse Spinal Cord Atlases of gene expression. Dr. Charles Watson and Dr, Gulgun Kayalioglu created a custom taxonomy for annotation of the spinal cord, covering cervical, thoracic, lumbar, sacral, and coccygeal segments.
The 2D sagittal reference atlas is annotated on Nissl sections collected from a juvenile male C57BL/6J mouse, postnatal day 4 (P4). It provides the spatial context for in situ hybridization-based gene expression in Allen Mouse Spinal Cord Atlas.
34 transverse sections at 2 mm intervals
The 2D sagittal reference atlas is annotated on Nissl sections collected from an adult male C57BL/6J mouse, postnatal day 56 (P56). It provides the spatial context for in situ hybridization-based gene expression in Allen Mouse Spinal Cord Atlas.
34 transverse sections at 2 mm intervals
Interactive Atlas Viewer (IAV)
Zoom-And-Pan (ZAP) Image Viewer
Using The High Resolution Image Viewer
Learn about Image Series Details Mouse Spinal Cord with comprehensive guides and examples from Allen Institute for Brain Science.
Learn about Search Mouse Spinal Cord with comprehensive guides and examples from Allen Institute for Brain Science.
Learn about Expression Mask Color Maps with comprehensive guides and examples from Allen Institute for Brain Science.
