The consensus basal ganglia cell type taxonomy is the result of iterative clustering and cross-species integration of transcriptomic data from single-nucleus 10x Genomics multiomic profiling. The taxonomy encompasses neurons from key structures within the basal ganglia, including the caudate (Ca), putamen (Pu), nucleus accumbens (NAc), the external and internal segments of the globus pallidus (GPe, GPi), ventral pallidus (VeP), subthalamic nucleus (STN), and substantia nigra (SN). By combining data from multiple primate and rodent species, this consensus taxonomy highlights both conserved and species-specific cell types.
Taxonomy Name: 08072025_HMBA-BICAN_CrossSpecies_BasalGanglia_10XMultiome
Taxonomy Description: Cross-Species Basal Ganglia Taxonomy
Species: Human | Macaque | Marmoset
Version: 1.0.0
CCN Number: CCN20250428
AIT Number: Human - 19.5 | Macaque - 11.9 | Marmoset - 101.0
Learn more about the project and download the data
Download the Human Taxonomy AIT File
Download the Macaque Taxonomy AIT File
Download the Marmoset Taxonomy AIT File
Programmatically access the data
To be added
Label your data using the consensus cross-species basal ganglia taxonomy as a reference
A cross-species taxonomy of the dorsal lateral geniculate nucleus (dLGN), the brain region that conveys visual information from the mammalian retina to the primary visual cortex
This resource summarizes the generation of a multimodal cell census and atlas of the mammalian primary motor cortex as the initial product of the BRAIN Initiative Cell Census Network (BICCN)
