Mouse Connectivity Atlas

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Document Collection

Documentation Mouse Connectivity Atlas

Available Files

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Retinal Projectome

Technical whitepaper describing the Retinal Projectome Mapping studies

Specimen Lists

Tumor specimens used for each of the different Ivy Glioblastoma Atlas Project studies

Reference Dataset

Technical whitepaper describing the generation of the reference datasets

Acknowledgements

Recognition of collaborators and others who provided assistance

BDA vs. rAAV

Technical whitepaper describing the comparative studies between BDA and rAAV tracing methods

Resources

A complete list of driver and reporter mice and viruses used in the Allen Mouse Brain Connectivity Atlas projectome data, Transgenic Characterization, and Allen Cell Types Database

Informatics Data Processing

Design and implementation of the Connectivity Informatics Data Pipeline (IDP)

Overview

Technical whitepaper describing the Projection Mapping studies

Mouse CCF, Reference Atlas, Version 3 (2017)

Overview of the design and implementation of the Allen Mouse Common Coordinate Framework

Explore More Resources

Documentation

Projection Dataset

Learn about Projection Dataset with comprehensive guides and examples from Allen Institute for Brain Science.

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API

API Allen Brain Connectivity Atlas

Learn about API Allen Brain Connectivity Atlas with comprehensive guides and examples from Allen Institute for Brain Science.

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Documentation

Transgenic Characterization

Learn about Transgenic Characterization with comprehensive guides and examples from Allen Institute for Brain Science.

Learn more